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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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570 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCA13
ENSSSCG00000031141
ENSG00000179869
ATP binding cassette subfamily A member 13
Tissue enriched
Detected in many
upper respiratory system:
42.6
ABCB8
ENSSSCG00000027986
ENSG00000197150
ATP binding cassette subfamily B member 8
Low tissue specificity
Detected in all
ABCG1
ENSSSCG00000027745
ENSG00000160179
ATP binding cassette subfamily G member 1
Low tissue specificity
Detected in many
ABHD16A
ENSSSCG00000034923
ENSG00000204427
Protein ABHD16A
Low tissue specificity
Detected in all
ABL2
ENSSSCG00000024674
ENSG00000143322
ABL proto-oncogene 2, non-receptor tyrosine kinase
Low tissue specificity
Detected in all
ACAD9
ENSSSCG00000023354
ENSG00000177646
Acyl-CoA dehydrogenase family member 9
Low tissue specificity
Detected in all
ACAP3
ENSSSCG00000003329
ENSG00000131584
ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
Low tissue specificity
Detected in all
ACVR1B
ENSSSCG00000000233
ENSG00000135503
Activin receptor type-1B precursor
Low tissue specificity
Detected in all
ADA2
ENSSSCG00000035218
ENSG00000093072
Adenosine deaminase 2 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
41.2
ADAR
ENSSSCG00000006543
ENSG00000160710
Adenosine deaminase, RNA specific
Low tissue specificity
Detected in all
ADARB1
ENSSSCG00000012089
ENSG00000197381
Adenosine deaminase, RNA specific B1
Low tissue specificity
Detected in all
ADCK1
ENSSSCG00000002408
ENSG00000063761
AarF domain containing kinase 1
Low tissue specificity
Detected in all
ADCY3
ENSSSCG00000008578
ENSG00000138031
Adenylate cyclase 3
Tissue enhanced
Detected in all
ovary:
38.6
ADGRA1
ENSSSCG00000039199
ENSG00000197177
Adhesion G protein-coupled receptor A1
Tissue enhanced
Detected in many
male glands:
31.0
ADGRG1
ENSSSCG00000002815
ENSG00000205336
Adhesion G-protein coupled receptor G1 precursor
Low tissue specificity
Detected in all
ADRA1D
ENSSSCG00000007139
ENSG00000171873
Alpha-1D adrenergic receptor
Tissue enhanced
Detected in many
brain:
11.8
ductus deferens:
12.7
male glands:
12.9
ADRA2C
ENSSSCG00000008703
ENSG00000184160
Adrenoceptor alpha 2C
Tissue enhanced
Detected in many
brain:
28.9
penis:
24.3
AGAP1
ENSSSCG00000016317
ENSG00000157985
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Low tissue specificity
Detected in all
AHCYL2
ENSSSCG00000016568
ENSG00000158467
Adenosylhomocysteinase like 2
Tissue enhanced
Detected in all
choroid plexus:
93.8
large intestine:
59.1
AMPD2
ENSSSCG00000031125
ENSG00000116337
Adenosine monophosphate deaminase 2
Low tissue specificity
Detected in all
ANKDD1A
ENSSSCG00000004545
ENSG00000166839
Ankyrin repeat and death domain containing 1A
Tissue enhanced
Detected in many
brain:
23.8
breast:
15.0
ANKRD33B
ENSSSCG00000039609
ENSG00000164236
Ankyrin repeat domain 33B
Tissue enhanced
Detected in many
skeletal muscle:
39.7
ANKRD52
ENSSSCG00000000386
ENSG00000139645
Ankyrin repeat domain 52
Low tissue specificity
Detected in all
ARHGAP22
ENSSSCG00000010381
ENSG00000128805
Rho GTPase activating protein 22
Tissue enhanced
Detected in many
synovial tissue:
28.6
ARHGAP26
ENSSSCG00000014399
ENSG00000145819
Rho GTPase activating protein 26
Low tissue specificity
Detected in all
ARHGEF2
ENSSSCG00000006502
ENSG00000116584
Rho guanine nucleotide exchange factor 2
Low tissue specificity
Detected in all
ARID4A
ENSSSCG00000005073
ENSG00000032219
AT-rich interactive domain-containing protein 4A
Low tissue specificity
Detected in all
ARRB1
ENSSSCG00000014852
ENSG00000137486
Arrestin beta 1
Low tissue specificity
Detected in all
ARRB2
ENSSSCG00000017918
ENSG00000141480
Arrestin beta 2
Low tissue specificity
Detected in all
ASAP2
ENSSSCG00000008642
ENSG00000151693
ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
Low tissue specificity
Detected in all
ASB13
ENSSSCG00000011145
ENSG00000196372
Ankyrin repeat and SOCS box containing 13
Tissue enhanced
Detected in all
kidney:
56.4
ATP10B
ENSSSCG00000021527
ENSG00000118322
ATPase phospholipid transporting 10B (putative)
Tissue enhanced
Detected in many
large intestine:
50.3
small intestine:
25.6
stomach:
21.1
ATP1A1
ENSSSCG00000006740
ENSG00000163399
Sodium/potassium-transporting ATPase subunit alpha-1 precursor
Tissue enhanced
Detected in all
kidney:
127.3
male glands:
141.9
ATP2B1
ENSSSCG00000027898
ENSG00000070961
Plasma membrane calcium-transporting ATPase 1
Low tissue specificity
Detected in all
ATP2B4
ENSSSCG00000015273
ENSG00000058668
ATPase plasma membrane Ca2+ transporting 4
Tissue enhanced
Detected in many
smooth muscle:
91.2
ATP8B4
ENSSSCG00000004646
ENSG00000104043
ATPase phospholipid transporting 8B4 (putative)
Tissue enhanced
Detected in many
kidney:
24.9
AVL9
ENSSSCG00000023445
ENSG00000105778
AVL9 cell migration associated
Low tissue specificity
Detected in all
B3GALT6
ENSSSCG00000022151
ENSG00000176022
Beta-1,3-galactosyltransferase 6
Low tissue specificity
Detected in all
BAIAP2
ENSSSCG00000017142
ENSG00000175866
BAI1 associated protein 2
Tissue enhanced
Detected in all
vagus nerve:
50.3
BAIAP3
ENSSSCG00000008029
ENSG00000007516
BAI1 associated protein 3
Tissue enhanced
Detected in many
brain:
36.9
pituitary gland:
26.1
BATF3
ENSSSCG00000026587
ENSG00000123685
Basic leucine zipper ATF-like transcription factor 3
Tissue enhanced
Detected in many
cornea:
11.7
BCL11A
ENSSSCG00000008392
ENSG00000119866
B-cell lymphoma/leukemia 11A
Tissue enhanced
Detected in many
brain:
38.0
lymphoid tissue:
26.5
BCL7A
ENSSSCG00000009801
ENSG00000110987
BCL tumor suppressor 7A
Low tissue specificity
Detected in all
BCR
ENSSSCG00000010052
ENSG00000186716
BCR, RhoGEF and GTPase activating protein
Low tissue specificity
Detected in all
BSCL2
ENSSSCG00000020823
ENSG00000168000
Seipin isoform 1
Tissue enhanced
Detected in all
testis:
129.5
BTBD11
ENSSSCG00000000162
ENSG00000151136
BTB domain containing 11
Tissue enhanced
Detected in many
skin:
28.9
C12orf49
ENSSSCG00000035873
ENSG00000111412
Chromosome 12 open reading frame 49
Low tissue specificity
Detected in all
C1QB
ENSSSCG00000033512
ENSG00000173369
Complement C1q subcomponent subunit B precursor
Tissue enhanced
Detected in many
lymphoid tissue:
125.8
synovial tissue:
91.1
C1QC
ENSSSCG00000038706
ENSG00000159189
Complement C1q subcomponent subunit C precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
synovial tissue:
86.3
C5AR1
ENSSSCG00000029371
ENSG00000197405
C5a anaphylatoxin chemotactic receptor 1
Tissue enhanced
Detected in all
synovial tissue:
61.0
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